Publications
- Tjioe E, Berry M, Homayouni R, Heinrich K. Using a literature-based NMF model for discovering gene functional relationships. BMC Bioinformatics 2008, 9(Suppl 7):P1.
- Heinrich KE, Berry MW, Homayouni R. Gene tree labeling using nonnegative matrix factorization on biomedical literature. Comput Intell Neurosci. 2008:276535. PMID: 18431447 [PubMed - in process].
- Wei L, Fan M, Xu L, Heinrich K, Berry MW, Homayouni R, Pfeffer LM. Bioinformatic analysis reveals cRel as a regulator of a subset of interferon-stimulated genes. J Interferon Cytokine Res. 2008 Sep, 28(9):541-51.
- Driscoll CJ, Cashion AK, Hathaway DK, Thompson C, Conley Y, Riely C, Xu L, Homayouni R. Blood gene expression profiling in liver transplant recipients with hepatitis C virus and posttransplantation diabetes mellitus. Transplant Proc. 38(10):3646-8, 2006.
- Homayouni R, Heinrich K, Wei L, Berry M. Gene clustering by Latent Semantic Indexing of MEDLINE abstracts. Bioinformatics, 21(1):104-15, 2005.
- Principal Component Analysis for Information Retrieval, M.W. Berry and D.I. Martin, in Handbook of Parallel Computing and Statistics, Chapman & Hall/CRC Series: Statistics: A Series of Textbooks and Monographs, E. Kontoghiorghes (Ed.), Boca Raton, FL, (2005), pp. 399-413.
- A Comprehensive Whole Genome Bacterial Phylogeny Using Correlated Peptide Motifs Defined in a High Dimensional Vector Space, G.W. Stuart and M.W. Berry, Journal of Bioinformatics and Computational Biology 1(3), 2003, pp. 475-493.
- The Semantic Conference Organizer, K. Heinrich, M.W. Berry, J.J. Dongarra, and S. Vadhiyar, in Statistical Data Mining and Knowledge Discovery, H. Bozdogan (Ed.), CRC Press, Boca Raton, (2003), pp. 571-581.
- Matrices, Vector Spaces, and Information Retrieval. M.W. Berry, Z. Drmac, and E.R. Jessup. SIAM Review 41:2, (1999), pp. 335-362.
